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ASM74707v1

Organism name:
Arenimonas malthae CC-JY-1 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CC-JY-1
BioSample:
SAMN03015223
BioProject:
PRJNA214577
Submitter:
Huazhong Agricultural University
Date:
2014/09/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000747075.1 (latest)
RefSeq assembly accession:
GCF_000747075.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AVCH01
Assembly method:
SOAPdenovo v. 1.05
Expected final version:
yes
Genome coverage:
256.5x
Sequencing technology:
Illumina HiSeq

IDs: 212341 [UID] 1303368 [GenBank] 1641038 [RefSeq]

See Genome Information for Arenimonas malthae

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Date::09/26/2013 09:19:14
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Provider::NCBI
Features Annotated::Gene; CDS; rRNA; tRNA; repeat_region
Annotation Software revision::2.1 (rev. 411575)
Genes::2,910
CDS::2,861
Pseudo Genes::0
rRNAs::5 ( 5S, 16S, 23S )
tRNAs::44
Frameshifted Genes::0
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,114,078
Total ungapped length3,114,078
Number of contigs221
Contig N5029,626
Contig L5031
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)221

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,114,0782213,114,07829,62600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Arenimonas malthae CC-JY-1Arenimonas malthae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003024235.1Arenimonas caenitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.2867.3070.94

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected