U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM59842v1

Organism name:
Bacteroides fragilis str. 34-F-2 #13 (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 34-F-2 #13
BioSample:
SAMN02315073
BioProject:
PRJNA206179
Submitter:
IGS
Date:
2014/03/20
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000598425.1 (latest)
RefSeq assembly accession:
GCF_000598425.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JGCQ01
Assembly method:
MaSuRCA v. 2.0
Genome coverage:
200x
Sequencing technology:
Illumina

IDs: 131701 [UID] 972988 [GenBank] 1353228 [RefSeq]

See Genome Information for Bacteroides fragilis

Pathogen Detection Resources

There are 1152 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria available from the Biodefense and Emerging Infections Research Resources Repository

Global statistics

Total sequence length5,262,880
Total ungapped length5,262,880
Number of contigs426
Contig N5034,895
Contig L5042
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)426

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced5,262,8804265,262,88034,89500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides fragilis str. 34-F-2 #13Bacteroides fragilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000025985.1Bacteroides fragilis NCTC 9343type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000025985.1Bacteroides fragilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9780.7081.02
Best-match type98.9780.7081.02

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna