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ASM81671v1

Organism name:
Staphylococcus aureus 917 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 917
BioSample:
SAMN03160716
BioProject:
PRJNA265867
Submitter:
The Genome Institute
Date:
2015/01/09
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000816715.1 (latest)
RefSeq assembly accession:
GCF_000816715.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JXBU01
Assembly method:
Velvet v. 1.1.06
Genome coverage:
100x
Sequencing technology:
Illumina

IDs: 242031 [UID] 1466768 [GenBank] 1476168 [RefSeq]

See Genome Information for Staphylococcus aureus

There are 90989 assemblies for this organism

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History (Show revision history)

Comment

The strain was isolated by Dr. Flavia Rosi and Dr. Cesar Arias (Division of Infectious Diseases University of Texas Medical School at Houston, 6431 Fannin St. MSB 2.112.Houston, TX 77030). It was collected from human blood in Brazil.

Coding sequences ... were predicted using GeneMark and Glimmer3. Intergenic regions not spanned by GeneMark and Glimmer3 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE and non-coding RNA genes by RNAmmer and Rfam. The final gene set is processed through several programs such as Kegg, psortB and Interproscan to determine possible function. Gene product names are determined by BER. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs.

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.  more

Global statistics

Total sequence length2,787,985
Total ungapped length2,782,485
Gaps between scaffolds0
Number of scaffolds52
Scaffold N50145,205
Scaffold L508
Number of contigs107
Contig N5054,983
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)107

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,787,985522,782,485145,205550

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Staphylococcus aureus 917Staphylococcus aureus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000330825.2Staphylococcus aureus subsp. aureus DSM 20231type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000330825.2Staphylococcus aureustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9095.7696.67
Best-match type99.9095.7696.67

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna