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ASM75027v1

Organism name:
Enterobacter hormaechei subsp. hoffmannii ECR091 (CDC Enteric Group 75)
Taxonomy check:
OK
Infraspecific name:
Strain: ECR091
BioSample:
SAMN02713646
BioProject:
PRJNA202892
Submitter:
NISC
Date:
2014/09/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000750275.1 (latest)
RefSeq assembly accession:
GCF_000750275.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 2
Genome coverage:
120x
Sequencing technology:
Pacific Biosciences RS II

IDs: 208531 [UID] 1198288 [GenBank] 1492098 [RefSeq]

See Genome Information for Enterobacter hormaechei

There are 7155 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/07/2024 01:31:05
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,757
CDSs (total)::4,643
Genes (coding)::4,528
CDSs (with protein)::4,528
Genes (RNA)::114
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::83
ncRNAs::6
Pseudo Genes (total)::115
CDSs (without protein)::115
Pseudo Genes (ambiguous residues)::0 of 115
Pseudo Genes (frameshifted)::46 of 115
Pseudo Genes (incomplete)::81 of 115
Pseudo Genes (internal stop)::21 of 115
Pseudo Genes (multiple problems)::28 of 115
Pseudo Genes (short protein)::1 of 115
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,959,888
Total ungapped length4,959,888
Total number of chromosomes and plasmids4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000750285.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP008905.1=NZ_CP008905.1
Plasmid pENT-4bdCP008907.1=NZ_CP008907.1
Plasmid pENT-08eCP008906.1=NZ_CP008906.1
Plasmid pKPC-47eCP008908.1=NZ_CP008908.1

Assembly statistics

MoleculeTotal
Length
All4,959,888
Chromosome 4,621,385
Plasmid pENT-4bd111,227
Plasmid pENT-08e176,943
Plasmid pKPC-47e50,333

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter hormaechei subsp. hoffmannii ECR091Enterobacter hormaechei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001729745.1Enterobacter hormaechei subsp. hoffmanniitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001729745.1Enterobacter hormaecheitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1686.5491.74
Best-match type99.1686.5491.74

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna