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ASM41627v1

Organism name:
Osedax symbiont Rs1 (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: Rs1
BioSample:
SAMN02470760
BioProject:
PRJNA191058
Submitter:
Korea University
Date:
2013/06/27
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_000416275.1 (latest)
RefSeq assembly accession:
GCF_000416275.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ASZJ01
Assembly method:
CLCgenomics workbench v. 5.0
Expected final version:
yes
Genome coverage:
300x
Sequencing technology:
454 GS FLX Titanium; Illumina GA IIx; Illumina MiSeq

IDs: 37771 [UID] 716628 [GenBank] 719078 [RefSeq]

See Genome Information for Osedax symbiont Rs1

History (Show revision history)

Comment

Global statistics

Total sequence length4,505,254
Total ungapped length4,505,254
Number of contigs226
Contig N5036,026
Contig L5033
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)226

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,505,2542264,505,25436,02600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Osedax symbiont Rs1Osedax symbiont Rs1

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001597725.1Neptuniibacter marinustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.950.330.43

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena