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Kleb_pneu_BIDMC_23_V1

Organism name:
Klebsiella pneumoniae BIDMC 23 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIDMC 23
BioSample:
SAMN02138653
BioProject:
PRJNA202034
Submitter:
Broad Institute
Date:
2013/10/30
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000492355.1 (latest)
RefSeq assembly accession:
GCF_000492355.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AYHZ01
Assembly method:
allpaths v. R45773
Genome coverage:
287.0x
Sequencing technology:
Illumina

IDs: 78031 [UID] 847128 [GenBank] 852308 [RefSeq]

See Genome Information for Klebsiella pneumoniae

There are 65433 assemblies for this organism

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History (Show revision history)

Comment

Please be aware that the annotation is done automatically with little or no manual curation.

Global statistics

Total sequence length5,490,411
Total ungapped length5,479,597
Gaps between scaffolds0
Number of scaffolds8
Scaffold N504,449,928
Scaffold L501
Number of contigs25
Contig N50472,877
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)25

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,490,41185,479,5974,449,928170

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella pneumoniae BIDMC 23Klebsiella pneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000788015.1Klebsiella pneumoniae subsp. pneumoniaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000788015.1Klebsiella pneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1490.9887.07
Best-match type99.1490.9887.07

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna