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Kleb_pneu_MGH_36_V1

Organism name:
Klebsiella pneumoniae MGH 36 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MGH 36
BioSample:
SAMN02138576
BioProject:
PRJNA201951
Submitter:
Broad Institute
Date:
2013/10/30
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000492875.1 (latest)
RefSeq assembly accession:
GCF_000492875.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AYIZ01
Assembly method:
allpaths v. R47032
Genome coverage:
144.0x
Sequencing technology:
Illumina

IDs: 78291 [UID] 847968 [GenBank] 852878 [RefSeq]

See Genome Information for Klebsiella pneumoniae

There are 65463 assemblies for this organism

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History (Show revision history)

Comment

Please be aware that the annotation is done automatically with little or no manual curation.

Global statistics

Total sequence length5,564,061
Total ungapped length5,545,032
Gaps between scaffolds0
Number of scaffolds6
Scaffold N504,619,818
Scaffold L501
Number of contigs26
Contig N50514,235
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)26

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,564,06165,545,0324,619,818200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella pneumoniae MGH 36Klebsiella pneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000788015.1Klebsiella pneumoniae subsp. pneumoniaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000788015.1Klebsiella pneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1389.9787.13
Best-match type99.1389.9787.13

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna