U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM44243v1

Organism name:
Rhizobium etli bv. mimosae str. Mim1 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Mim1
BioSample:
SAMN02603105
BioProject:
PRJNA200310
Submitter:
Centro de Ciencias Genomicas UNAM
Date:
2013/07/31
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000442435.1 (latest)
RefSeq assembly accession:
GCF_000442435.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Velvet v 1.1.06; Newbler v.2.5.3; phred-Phrap/Consed v. 23; Space-Bassic 2.0
Genome coverage:
150X
Sequencing technology:
Sanger ABI3730xl; 454 GS and Titanium; Illumina GAII

IDs: 46991 [UID] 749778 [GenBank] 751538 [RefSeq]

See Genome Information for Rhizobium etli

Pathogen Detection Resources

There are 19 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacterial strain is available under request to Dr. Esperanza Mart nez (emartine@ccg.unam.mx)

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/30/2023 04:21:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,908
CDSs (total)::6,844
Genes (coding)::6,548
CDSs (with protein)::6,548
Genes (RNA)::64
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::51
ncRNAs::4
Pseudo Genes (total)::296
CDSs (without protein)::296
Pseudo Genes (ambiguous residues)::0 of 296
Pseudo Genes (frameshifted)::175 of 296
Pseudo Genes (incomplete)::193 of 296
Pseudo Genes (internal stop)::37 of 296
Pseudo Genes (multiple problems)::97 of 296
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,197,998
Total ungapped length7,197,998
Total number of chromosomes and plasmids7

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000442445.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP005950.1=NC_021905.1
Plasmid pRetMIM1aCP005951.1=NC_021906.1
Plasmid pRetMIM1bCP005952.1=NC_021907.1
Plasmid pRetMIM1dCP005954.1=NC_021908.1
Plasmid pRetMIM1eCP005955.1=NC_021909.1
Plasmid pRetMIM1fCP005956.1=NC_021911.1
Plasmid pRetNIM1cCP005953.1=NC_021910.1

Assembly statistics

MoleculeTotal
Length
All7,197,998
Chromosome 4,284,494
Plasmid pRetMIM1a181,313
Plasmid pRetMIM1b252,689
Plasmid pRetMIM1d512,054
Plasmid pRetMIM1e615,363
Plasmid pRetMIM1f1,082,659
Plasmid pRetNIM1c269,426

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Rhizobium etli bv. mimosae str. Mim1Rhizobium etli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000092045.1Rhizobium etli CFN 42suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000092045.1Rhizobium etlisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7279.9288.10
Best-match type98.7279.9288.10

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna