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Source database (GenBank or RefSeq) File type

ASM63241v1

Organism name:: Klebsiella michiganensis HKOPL1 (enterobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: HKOPL1
BioSample:: SAMN03081460
BioProject:: PRJNA194061
Submitter:: Bioinformatics Center,Nanjing Agricultural University
Date:: 2014/04/15
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_000632415.1 (latest)
RefSeq assembly accession:: GCF_000632415.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Newbler v. 2.7; Laser Gene v. 7.0
Genome coverage:: 23x
Sequencing technology:: Sanger dideoxy sequencing; 454

IDs: 148641 [UID] 1007588 [GenBank] 1646318 [RefSeq]

See Genome Information for Klebsiella michiganensis

Pathogen Detection Resources

There are 991 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000632415.1	=	GCF_000632415.1	ASM63241v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
The organism was changed from "Klebsiella oxytoca" to "Klebsiella michiganensis" in July 2016.

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::03/03/2024 05:40:31
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,610
CDSs (total)::5,491
Genes (coding)::5,229
CDSs (with protein)::5,229
Genes (RNA)::119
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::86
ncRNAs::8
Pseudo Genes (total)::262
CDSs (without protein)::262
Pseudo Genes (ambiguous residues)::0 of 262
Pseudo Genes (frameshifted)::190 of 262
Pseudo Genes (incomplete)::84 of 262
Pseudo Genes (internal stop)::21 of 262
Pseudo Genes (multiple problems)::28 of 262
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##This Genome (query)::GCA_000632415.1
Current Name::Klebsiella michiganensis
Previous Name::Klebsiella oxytoca
Date Updated::2016-07-08
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. PROXYTYPE genome for current name
A1 Genome (subject)::GCA_000633235.1
A1 Name::Klebsiella michiganensis
A1 ANI::98.90731%
A1 Query Coverage::90%
A1 Subject Coverage::91%
Analysis 2 (A2)::Query vs. PROXYTYPE genome for previous name
A2 Genome (subject)::GCA_000507385.1
A2 Name::Klebsiella oxytoca
A2 ANI::92.59859%
A2 Query Coverage::83%
A2 Subject Coverage::84%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length	5,914,407
Total ungapped length	5,914,407
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	98.83	91.14	87.04
Best-match type	98.83	91.14	87.04

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ASM63241v1

See Genome Information for Klebsiella michiganensis

Pathogen Detection Resources

There are 991 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Taxonomic-Update-Statistics

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