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ASM35960v1

Organism name:
Gracilibacillus halophilus YIM-C55.5 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: YIM-C55.5
BioSample:
SAMN02470131
BioProject:
PRJNA194065
Submitter:
King Abdullah University fo Science and Technology
Date:
2013/04/09
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000359605.1 (latest)
RefSeq assembly accession:
GCF_000359605.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
APML01
Assembly method:
CLC v. 5.5.2
Genome coverage:
150x
Sequencing technology:
IonTorrent

IDs: 661778 [UID] 582238 [GenBank] 661778 [RefSeq]

See Genome Information for Gracilibacillus halophilus

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be aware that the annotation is done automatically with little or no manual curation.

Global statistics

Total sequence length3,034,425
Total ungapped length3,034,425
Number of contigs104
Contig N5052,219
Contig L5017
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)104

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,034,4251043,034,42552,21900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Gracilibacillus halophilus YIM-C55.5Gracilibacillus halophilus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_010994085.1Gracilibacillus saliphilustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.582.461.66

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected