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ASM38592v1

Organism name:
Streptococcus cristatus AS 1.3089 (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AS 1.3089
BioSample:
SAMN02603400
BioProject:
PRJNA192658
Submitter:
Institute of Microbiology, Chinese Academy of Sciences
Date:
2013/05/01
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from synonym type material
GenBank assembly accession:
GCA_000385925.1 (latest)
RefSeq assembly accession:
GCF_000385925.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 3.0
Reference guided assembly:
CP000725.1; CP000387.1
Genome coverage:
28x
Sequencing technology:
454

IDs: 653488 [UID] 643518 [GenBank] 653488 [RefSeq]

See Genome Information for Streptococcus cristatus

There are 52 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000385925.1-RS_2024_03_15
Annotation Date::03/15/2024 02:10:02
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,156
CDSs (total)::2,091
Genes (coding)::1,994
CDSs (with protein)::1,994
Genes (RNA)::65
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::50
ncRNAs::3
Pseudo Genes (total)::97
CDSs (without protein)::97
Pseudo Genes (ambiguous residues)::0 of 97
Pseudo Genes (frameshifted)::60 of 97
Pseudo Genes (incomplete)::38 of 97
Pseudo Genes (internal stop)::22 of 97
Pseudo Genes (multiple problems)::19 of 97
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,142,100
Total ungapped length2,142,100
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000385935.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP004409.1=NC_021175.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,142,100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus cristatus AS 1.3089Streptococcus cristatus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900475445.1Streptococcus cristatus ATCC 51100type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900475445.1Streptococcus cristatustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type92.9379.2384.85
Best-match type92.9379.2384.85

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna