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SSAKE_FusoCC53

Organism name:
Fusobacterium nucleatum CC53 (fusobacteria)
Taxonomy check:
Failed
Infraspecific name:
Strain: CC53
BioSample:
SAMN02469329
BioProject:
PRJNA190102
Submitter:
BC Cancer Agency
Date:
2013/03/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000347315.1 (latest)
RefSeq assembly accession:
GCF_000347315.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AOUL01
Assembly method:
SSAKE v. 3.7
Genome coverage:
1000.0x
Sequencing technology:
Illumina HiSeq

IDs: 558368 [UID] 558368 [GenBank] 736458 [RefSeq]

See Genome Information for Fusobacterium nucleatum

There are 169 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be aware that the annotation is done automatically with little or no manual curation.
Bacteria available from Emma ... Allen-Vercoe, Assistant Professor Molecular and Cellular Biology, University of Guelph, 50 Stone Road East, Guelph, Ontario N1G 2W1, Canada.
Source DNA available from Robert A. Holt, Senior Scientist, BC Cancer Agency Genome Sciences Centre, 675 West 10th Avenue, Vancouver, BC V5Z 1L3, Canada.  more

Global statistics

Total sequence length2,069,558
Total ungapped length2,069,558
Number of contigs379
Contig N508,680
Contig L5077
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)379

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,069,5583792,069,5588,68000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Fusobacterium nucleatum CC53Fusobacterium nucleatum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_003019295.1Fusobacterium nucleatum subsp. nucleatum ATCC 25586type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000182945.1Fusobacterium vincentiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type92.5984.0779.81
Best-match type97.6486.2084.22

ANI result

Taxonomy check statusBest match statusComment
Failedmismatchna