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ASM42086v1

Organism name:
Butyrivibrio sp. XPD2006 (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: XPD2006
BioSample:
SAMN02440910
BioProject:
PRJNA185683
Submitter:
DOE Joint Genome Institute
Date:
2013/07/09
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000420865.1 (latest)
RefSeq assembly accession:
GCF_000420865.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ATVT01
Assembly method:
Unknown program v. before 2013-05-07
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 40211 [UID] 729268 [GenBank] 846948 [RefSeq]

See Genome Information for Butyrivibrio sp. XPD2006

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1012773
Source DNA and Organism available from William Kelly (bill.kelly@agresearch.co.nz)
Source DNA available from William Kelly (bill.kelly@agresearch.co.nz)
Organism available from William Kelly (bill.kelly@agresearch.co.nz)
Contacts: William Kelly (bill.kelly@agresearch.co.nz)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::Butyrivibrio sp. XPD2006
sequencing_meth::WGS
GOLD Stamp ID::Gi22237
Gram Staining::Gram+
##MIGS-Data-END##

Global statistics

Total sequence length3,888,106
Total ungapped length3,888,106
Number of contigs31
Contig N50229,179
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)31

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,888,106313,888,106229,17900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Butyrivibrio sp. XPD2006Butyrivibrio sp. XPD2006

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900129945.1Butyrivibrio fibrisolvenssuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.932.692.16

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena