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57.A.08

Organism name:
Salmonella enterica subsp. enterica serovar Agona str. 57.A.08 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 57.A.08
BioSample:
SAMEA2271932
BioProject:
PRJEB1119
Submitter:
ERI
Date:
2013/04/30
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000389255.1 (latest)
RefSeq assembly accession:
GCF_000389255.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CATT01

IDs: 677478 [UID] 652948 [GenBank] 677478 [RefSeq]

See Genome Information for Salmonella enterica

Pathogen Detection Resources

There are 527808 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length4,703,678
Total ungapped length4,700,492
Gaps between scaffolds0
Number of scaffolds166
Scaffold N50104,019
Scaffold L5015
Number of contigs196
Contig N50102,342
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)166

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced4,703,6781664,700,492104,019300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salmonella enterica subsp. enterica serovar Agona str. 57.A.08Salmonella enterica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000006945.2Salmonella enterica subsp. enterica serovar Typhimurium str. LT2type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000006945.2Salmonella entericatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.5693.4188.67
Best-match type98.5693.4188.67

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna