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MGS240

Organism name:
Firmicutes bacterium CAG:240 (firmicutes)
Taxonomy check:
Inconclusive
BioSample:
SAMEA3138699
BioProject:
PRJEB780
Submitter:
DTU
Date:
2013/07/17
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_000436275.1 (latest)
RefSeq assembly accession:
GCF_000436275.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CBDR01
Genome coverage:
22x

IDs: 43941 [UID] 743248 [GenBank] 798348 [RefSeq]

See Genome Information for Firmicutes bacterium CAG:240

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length1,973,564
Total ungapped length1,967,128
Gaps between scaffolds0
Number of scaffolds180
Scaffold N5021,353
Scaffold L5025
Number of contigs317
Contig N5013,250
Contig L5042
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)317

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced1,973,5641801,967,12821,3531370

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Firmicutes bacterium CAG:240Firmicutes bacterium CAG:240

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003425665.1Evtepia gabavoroustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.571.781.41

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena