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MGS646

Organism name:
Firmicutes bacterium CAG:646 (firmicutes)
Taxonomy check:
Inconclusive
BioSample:
SAMEA3138504
BioProject:
PRJEB971
Submitter:
DTU
Date:
2013/07/17
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_000432335.1 (latest)
RefSeq assembly accession:
GCF_000432335.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CAZW01
Genome coverage:
57x

IDs: 41971 [UID] 739308 [GenBank] 2035128 [RefSeq]

See Genome Information for Firmicutes bacterium CAG:646

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length2,881,161
Total ungapped length2,873,470
Gaps between scaffolds0
Number of scaffolds91
Scaffold N5067,734
Scaffold L5017
Number of contigs217
Contig N5023,739
Contig L5039
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)217

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,881,161912,873,47067,7341260

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Firmicutes bacterium CAG:646Firmicutes bacterium CAG:646

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900155395.1Merdibacter massiliensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.951.201.40

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena