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IDs: 714288 [UID] 714288 [GenBank] 731288 [RefSeq]
Bacteria and source DNA were provided by Amanda Lewis, Ph.D. (Washington University School of Medicine, Department of Molecular Microbiology, Campus Box 8230 660 S. Euclid Ave. St. Louis, MO 63110). Coding sequences were predicted using GeneMark and Glimmer3. Intergenic regions ... not spanned by GeneMark and Glimmer3 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE and non-coding RNA genes by RNAmmer and Rfam. The final gene set is processed through several programs such as Kegg, psortB and Interproscan to determine possible function. Gene product names are determined by BER. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. This work was funded in part by the March of Dimes Basil O'Connor award and the National Human Genome Research Institute (NHGRI)/National Institutes of Health (NIH) for characterization of this genome. more
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