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ASM96442v1

Organism name:
Komagataeibacter intermedius TF2 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: TF2
BioSample:
SAMD00036641
BioProject:
PRJDB503
Submitter:
Kinki University
Date:
2015/03/21
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000964425.1 (latest)
RefSeq assembly accession:
GCF_000964425.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BANF01
Assembly method:
Velent v. 1.0.3
Genome coverage:
129.0x
Sequencing technology:
Illumina HiSeq2000

IDs: 317571 [UID] 1711938 [GenBank] 1894548 [RefSeq]

See Genome Information for Komagataeibacter intermedius

There are 5 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,883,532
Total ungapped length3,883,492
Gaps between scaffolds0
Number of scaffolds943
Scaffold N5060,133
Scaffold L5020
Number of contigs947
Contig N5060,133
Contig L5020
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)943

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,883,5329433,883,49260,13340

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Komagataeibacter intermedius TF2Komagataeibacter intermedius

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_949281285.1Komagataeibacter intermediustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_949281285.1Komagataeibacter intermediustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9997.4798.91
Best-match type99.9997.4798.91

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna