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ASM33679v1

Organism name:
Haloferax lucentense DSM 14919 (euryarchaeotes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: DSM 14919
BioSample:
SAMN02471684
BioProject:
PRJNA174905
Submitter:
University of California, Davis
Date:
2013/02/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000336795.1 (latest)
RefSeq assembly accession:
GCF_000336795.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AOLH01
Assembly method:
A5 v. Nov-2011
Genome coverage:
200x
Sequencing technology:
Illumina GAIIX; HiSeq

IDs: 537228 [UID] 533378 [GenBank] 537228 [RefSeq]

See Genome Information for Haloferax lucentense

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be aware that the annotation is done automatically with little or no manual curation.

Global statistics

Total sequence length3,619,064
Total ungapped length3,619,064
Number of contigs33
Contig N50221,857
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)33

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,619,064333,619,064221,85700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Haloferax lucentense DSM 14919Haloferax lucentense

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_030535215.1Haloferax alexandrinussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.3593.9493.48

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchassembly is type-material