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Source database (GenBank or RefSeq) File type

ASM83516v1

Organism name:: Corynebacterium marinum DSM 44953 (high G+C Gram-positive bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: DSM 44953
BioSample:: SAMN02800399
BioProject:: PRJNA172963
Submitter:: CeBiTec, Bielefeld University
Date:: 2015/02/10
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_000835165.1 (latest)
RefSeq assembly accession:: GCF_000835165.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Newbler v. 2.8
Genome coverage:: 243.8x
Sequencing technology:: Illumina

IDs: 251841 [UID] 1528928 [GenBank] 1530118 [RefSeq]

See Genome Information for Corynebacterium marinum

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000835165.1	=	GCF_000835165.1	ASM83516v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000835165.1-RS_2024_04_26
Annotation Date::04/26/2024 01:32:35
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,624
CDSs (total)::2,556
Genes (coding)::2,518
CDSs (with protein)::2,518
Genes (RNA)::68
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::53
ncRNAs::3
Pseudo Genes (total)::38
CDSs (without protein)::38
Pseudo Genes (ambiguous residues)::0 of 38
Pseudo Genes (frameshifted)::14 of 38
Pseudo Genes (incomplete)::24 of 38
Pseudo Genes (internal stop)::5 of 38
Pseudo Genes (multiple problems)::5 of 38
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,729,219
Total ungapped length	2,729,219
Total number of chromosomes and plasmids	3

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP007790.1	=	NZ_CP007790.1
Plasmid pCmarinum1	CP007792.1	=	NZ_CP007792.1
Plasmid pCmarinum2	CP007791.1	=	NZ_CP007791.1

Molecule	Total Length
All	2,729,219
Chromosome	2,607,268
Plasmid pCmarinum1	96,094
Plasmid pCmarinum2	25,857

	ANI	Query coverage	Subject coverage
Declared type	99.99	98.22	99.96
Best-match type	99.99	98.22	99.96

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ASM83516v1

See Genome Information for Corynebacterium marinum

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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