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ASM34415v1

Organism name:
Gordonia paraffinivorans NBRC 108238 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NBRC 108238
BioSample:
SAMD00041809
BioProject:
PRJDB468
Submitter:
National Institute of Technology and Evaluation
Date:
2013/02/27
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000344155.1 (latest)
RefSeq assembly accession:
GCF_000344155.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BAOQ01
Assembly method:
Newbler v. 2.6
Genome coverage:
136x
Sequencing technology:
454 GS-FLX Titanium; Illumina HiSeq 1000

IDs: 554218 [UID] 554198 [GenBank] 554218 [RefSeq]

See Genome Information for Gordonia paraffinivorans

There are 16 assemblies for this organism

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History (Show revision history)

Comment


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URL:http://www.bio.nite.go.jp/

Global statistics

Total sequence length4,632,332
Total ungapped length4,632,332
Number of contigs111
Contig N50107,882
Contig L5018
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)111

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,632,3321114,632,332107,88200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Gordonia paraffinivorans NBRC 108238Gordonia paraffinivorans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_021245825.1Gordonia metallireducenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.7260.2755.63

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected