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Acin_juni_CIP_64_5_V1

Organism name:
Acinetobacter junii CIP 64.5 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CIP 64.5
BioSample:
SAMN01828161
BioProject:
PRJNA183286
Submitter:
Broad Institute
Date:
2013/04/19
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000368765.1 (latest)
RefSeq assembly accession:
GCF_000368765.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
APPX01
Assembly method:
allpaths v. R43241
Genome coverage:
133.0x
Sequencing technology:
Illumina

IDs: 669538 [UID] 596218 [GenBank] 669538 [RefSeq]

See Genome Information for Acinetobacter junii

There are 115 assemblies for this organism

See more

History (Show revision history)

Comment

Please be aware that the annotation is done automatically with little or no manual curation.

Global statistics

Total sequence length3,357,744
Total ungapped length3,330,618
Gaps between scaffolds0
Number of scaffolds7
Scaffold N501,961,641
Scaffold L501
Number of contigs41
Contig N50139,333
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)41

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,357,74473,330,6181,961,641340

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acinetobacter junii CIP 64.5Acinetobacter junii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900444875.1Acinetobacter juniitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900444875.1Acinetobacter juniitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9799.4298.52
Best-match type99.9799.4298.52

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna