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T61

Organism name:: Clostridioides difficile T61 (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: T61
BioSample:: SAMEA3138916
BioProject:: PRJEB216
Submitter:: LPBA
Date:: 2013/10/15
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_000531715.1 (latest)
RefSeq assembly accession:: GCF_000531715.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: CAND01
Genome coverage:: 1034x

IDs: 98601 [UID] 905388 [GenBank] 1649998 [RefSeq]

See Genome Information for Clostridioides difficile

Pathogen Detection Resources

There are 19331 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000531715.1	=	GCF_000531715.1	T61	Scaffold	Latest GenBank, Latest RefSeq

Comment

Annotation results relative to BLAST similarities, COG assignations, enzymatic function prediction (PRIAM software), TMHMM, PsortB and SignalP predictions, and synteny conservation (Syntonizer software) are available in the MicroScope annotation platform
http://www.genoscope.cns.fr/agc/microscope.

Global statistics

Total sequence length	4,071,443
Total ungapped length	4,071,443
Gaps between scaffolds	0
Number of scaffolds	82
Scaffold N50	141,610
Scaffold L50	9
Number of contigs	82
Contig N50	141,610
Contig L50	9
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	82

	ANI	Query coverage	Subject coverage
Declared type	99.44	94.46	91.40
Best-match type	99.44	94.46	91.40

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T61

See Genome Information for Clostridioides difficile

Pathogen Detection Resources

There are 19331 assemblies for this organism

History (Show revision history)

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