U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Fuso_nucl_CTI-3_V1

Organism name:
Fusobacterium nucleatum CTI-3 (fusobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: CTI-3
BioSample:
SAMN02597024
BioProject:
PRJNA170358
Submitter:
Broad Institute
Date:
2013/10/23
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000479245.1 (latest)
RefSeq assembly accession:
GCF_000479245.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AXNX01
Assembly method:
allpaths v. R45374
Genome coverage:
140.0x
Sequencing technology:
Illumina

IDs: 70051 [UID] 822928 [GenBank] 826868 [RefSeq]

See Genome Information for Fusobacterium nucleatum

There are 169 assemblies for this organism

See more

History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.
Source DNA provided by Alex Kostic and Wendy Garrett (Harvard School of Public Health, Boston, MA 02115, USA).
Bacteria provided by ... Alex Kostic and Wendy Garrett (Harvard School of Public Health, Boston, MA 02115, USA). 
Please be aware that the annotation is done automatically with little or no manual curation.
Gene Calling Method: Prodigal.  more

Global statistics

Total sequence length2,205,574
Total ungapped length2,192,741
Gaps between scaffolds0
Number of scaffolds6
Scaffold N501,266,104
Scaffold L501
Number of contigs22
Contig N50229,067
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)22

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,205,57462,192,7411,266,104160

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Fusobacterium nucleatum CTI-3Fusobacterium nucleatum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_003019295.1Fusobacterium nucleatum subsp. nucleatum ATCC 25586type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000220825.1Fusobacterium animalissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type91.7776.5176.95
Best-match type96.7778.0175.37

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchcoverage is less than 80%