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ASM28283v1

Organism name:
Pandoraea sp. B-6 (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: B-6
BioSample:
SAMN02469430
BioProject:
PRJNA169519
Submitter:
Central South university
Date:
2013/03/04
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000282835.1 (latest)
RefSeq assembly accession:
GCF_000282835.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AKXS01
Assembly method:
SOAPdenovo v. 1.05
Genome coverage:
30x
Sequencing technology:
Illumina

IDs: 621218 [UID] 554318 [GenBank] 621218 [RefSeq]

See Genome Information for Pandoraea sp. B-6

Pathogen Detection Resources

History (Show revision history)

Comment

Reference-guided assembly based on Ralstonia solanacearum UW551 deposited in NZ_AAKL00000000.1.

Global statistics

Total sequence length5,035,498
Total ungapped length5,023,165
Gaps between scaffolds0
Number of scaffolds148
Scaffold N5073,523
Scaffold L5022
Number of contigs348
Contig N5029,044
Contig L5049
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)348

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced5,035,4981485,023,16573,5232000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pandoraea sp. B-6Pandoraea sp. B-6

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_902459665.1Pandoraea cepalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.4087.3883.24

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna