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Buty_pull_1_20_V1

Organism name:
Butyricicoccus pullicaecorum 1.2 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 1.2
BioSample:
SAMN02596945
BioProject:
PRJNA170345
Submitter:
Broad Institute
Date:
2013/05/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000398925.1 (latest)
RefSeq assembly accession:
GCF_000398925.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AQOB01
Assembly method:
allpaths v. R42787
Genome coverage:
142.0x
Sequencing technology:
Illumina

IDs: 691218 [UID] 685958 [GenBank] 691218 [RefSeq]

See Genome Information for Butyricicoccus pullicaecorum

There are 28 assemblies for this organism

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History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.
Source DNA provided by Filipe Van Immerseel and Venessa Eeckhaut (Ghent University, Ghent, Belgium). 
Bacteria provided by Filipe Van Immerseel ... and Venessa Eeckhaut (Ghent University, Ghent, Belgium). 
Please be aware that the annotation is done automatically with little or no manual curation.
Gene Calling Method: Prodigal.  more

Global statistics

Total sequence length3,325,721
Total ungapped length3,299,517
Gaps between scaffolds0
Number of scaffolds4
Scaffold N501,868,409
Scaffold L501
Number of contigs17
Contig N50760,895
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)17

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,325,72143,299,5171,868,409130

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Butyricicoccus pullicaecorum 1.2Butyricicoccus pullicaecorum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900167005.1Butyricicoccus pullicaecorum DSM 23266suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900167005.1Butyricicoccus pullicaecorumsuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9998.8199.73
Best-match type99.9998.8199.73

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna