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Micr_sp_oral_taxon_186_F0373_V1

Organism name:
Microbacterium sp. oral taxon 186 str. F0373 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: F0373
BioSample:
SAMN02596977
BioProject:
PRJNA169458
Submitter:
Broad Institute
Date:
2013/06/14
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000411455.1 (latest)
RefSeq assembly accession:
GCF_000411455.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ATCC01
Assembly method:
allpaths v. R44024
Genome coverage:
139.0x
Sequencing technology:
Illumina

IDs: 713848 [UID] 705678 [GenBank] 713848 [RefSeq]

See Genome Information for Microbacterium sp. oral taxon 186

History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.
Source DNA provided by Alice Kirega, Floyd E. Dewhirst, and Jacques Izard. (The Forsyth Institute, Department of Molecular Genetics, 245 ... First St, Cambridge, Massachusetts, 02142, USA). 
Bacteria provided by Alice Kirega, Floyd E. Dewhirst, and Jacques Izard. (The Forsyth Institute, Department of Molecular Genetics, 245 First St, Cambridge, Massachusetts, 02142, USA).
Please be aware that the annotation is done automatically with little or no manual curation.
Gene Calling Method: Prodigal.  more

Global statistics

Total sequence length3,168,064
Total ungapped length3,164,554
Gaps between scaffolds0
Number of scaffolds7
Scaffold N502,107,758
Scaffold L501
Number of contigs13
Contig N50634,819
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)13

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,168,06473,164,5542,107,75860

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Microbacterium sp. oral taxon 186 str. F0373Microbacterium sp. oral taxon 186

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016907555.1Microbacterium laevaniformanstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.2275.4478.76

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna