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ASM31194v1

Organism name:
Lacticaseibacillus rhamnosus LRHMDP2 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: LRHMDP2
BioSample:
SAMN01737618
BioProject:
PRJNA169251
Submitter:
Westmead Centre for Oral Health and Westmead Millennium Institute, Westmead Hostpital
Date:
2012/11/09
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000311945.1 (latest)
RefSeq assembly accession:
GCF_000311945.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AMQW01
Assembly method:
Newbler v. 2.6
Genome coverage:
17.0x
Sequencing technology:
454

IDs: 494248 [UID] 456278 [GenBank] 494248 [RefSeq]

See Genome Information for Lacticaseibacillus rhamnosus

Pathogen Detection Resources

There are 633 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,911,110
Total ungapped length2,911,110
Number of contigs50
Contig N50181,493
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)50

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,911,110502,911,110181,49300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lacticaseibacillus rhamnosus LRHMDP2Lacticaseibacillus rhamnosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002849515.1Lacticaseibacillus rhamnosustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002849515.1Lacticaseibacillus rhamnosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.5787.6485.76
Best-match type97.5787.6485.76

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna