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ASM27594v1

Organism name:
Pseudomonas amygdali pv. tabaci str. 6605 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 6605
BioSample:
SAMN02471736
BioProject:
PRJNA165717
Submitter:
University of Exeter
Date:
2012/07/09
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000275945.1 (latest)
RefSeq assembly accession:
GCF_000275945.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AJXI01
Assembly method:
Newbler v. 2.0.00.22
Genome coverage:
50x
Sequencing technology:
454

IDs: 617538 [UID] 396418 [GenBank] 617538 [RefSeq]

See Genome Information for Pseudomonas amygdali

There are 118 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Annotation was added to the contigs in July 2014

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/18/2014 15:17:41
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.6 (rev. 440435)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::5,416
CDS::5,142
Pseudo Genes::220
rRNAs::2 ( 16S, 23S )
tRNAs::50
ncRNA::2
Frameshifted Genes::208
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,159,286
Total ungapped length6,159,286
Number of contigs283
Contig N5064,341
Contig L5031
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)283

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,159,2862836,159,28664,34100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas amygdali pv. tabaci str. 6605Pseudomonas amygdali

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_022828345.1Pseudomonas amygdali pv. loropetalipathovar

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_022828345.1Pseudomonas amygdalipathovar

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.7684.9582.47
Best-match type97.7684.9582.47

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna