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PAMC22718V0

Organism name:
Pseudoalteromonas sp. PAMC 22718 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: PAMC 22718
BioSample:
SAMN02470171
BioProject:
PRJNA159457
Submitter:
Korea Polar Research Institute
Date:
2012/05/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000263075.1 (latest)
RefSeq assembly accession:
GCF_000263075.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AJTK01
Assembly method:
Celera Assembler v. 7.0
Genome coverage:
131.35x
Sequencing technology:
Illumina GAII

IDs: 616958 [UID] 380248 [GenBank] 616958 [RefSeq]

See Genome Information for Pseudoalteromonas sp. PAMC 22718

Pathogen Detection Resources

History (Show revision history)

Comment

Bacteria available from Polar and Alpine Microbial Collection

Global statistics

Total sequence length4,184,624
Total ungapped length4,184,624
Number of contigs56
Contig N50127,821
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)56

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced4,184,624564,184,624127,82100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudoalteromonas sp. PAMC 22718Pseudoalteromonas sp. PAMC 22718

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002310835.1Pseudoalteromonas tetraodonissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.4189.6390.85

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna