U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Ente_faec_Merz151_V1

Organism name:
Enterococcus faecalis EnGen0358 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: Merz151
BioSample:
SAMN00847620
BioProject:
PRJNA157779
Submitter:
Broad Institute
Date:
2013/05/14
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000393235.1 (latest)
RefSeq assembly accession:
GCF_000393235.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ASDS01
Assembly method:
allpaths v. R42381
Genome coverage:
146.0x
Sequencing technology:
Illumina

IDs: 678658 [UID] 678658 [GenBank] 1087608 [RefSeq]

See Genome Information for Enterococcus faecalis

There are 8807 assemblies for this organism

See more

History (Show revision history)

Comment

Please be aware that the annotation is done automatically with little or no manual curation.

Global statistics

Total sequence length3,063,950
Total ungapped length3,051,892
Gaps between scaffolds0
Number of scaffolds20
Scaffold N50661,099
Scaffold L502
Number of contigs37
Contig N50269,586
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)37

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,063,950203,051,892661,099170

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterococcus faecalis EnGen0358Enterococcus faecalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000392875.1Enterococcus faecalis ATCC 19433 = NBRC 100480type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000392875.1Enterococcus faecalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.8783.4588.54
Best-match type98.8783.4588.54

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna