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Ente_faec_RMC5_V1

Organism name:
Enterococcus faecalis EnGen0363 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: RMC5
BioSample:
SAMN00847605
BioProject:
PRJNA157747
Submitter:
Broad Institute
Date:
2013/05/14
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000392935.1 (latest)
RefSeq assembly accession:
GCF_000392935.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ASDD01
Assembly method:
allpaths v. R42411
Genome coverage:
144.0x
Sequencing technology:
Illumina

IDs: 678358 [UID] 678358 [GenBank] 1087288 [RefSeq]

See Genome Information for Enterococcus faecalis

There are 8869 assemblies for this organism

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History (Show revision history)

Comment

Please be aware that the annotation is done automatically with little or no manual curation.

Global statistics

Total sequence length2,946,640
Total ungapped length2,936,085
Gaps between scaffolds0
Number of scaffolds17
Scaffold N501,483,373
Scaffold L501
Number of contigs32
Contig N50284,524
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)32

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,946,640172,936,0851,483,373150

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterococcus faecalis EnGen0363Enterococcus faecalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_029024925.1Enterococcus faecalistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_029024925.1Enterococcus faecalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7584.3786.41
Best-match type98.7584.3786.41

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna