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ASM37498v1

Organism name:
Micromonospora sp. CNB394 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CNB394
BioSample:
SAMN02441007
BioProject:
PRJNA175170
Submitter:
DOE Joint Genome Institute
Date:
2013/04/23
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000374985.1 (latest)
RefSeq assembly accession:
GCF_000374985.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ARGW01
Assembly method:
Velvet v. 1.1.04; ALLPATHS v. R37654
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 637378 [UID] 603978 [GenBank] 637378 [RefSeq]

See Genome Information for Micromonospora sp. CNB394

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 409221
Source DNA and Organism available from Paul Jensen (pjensen@ucsd.edu)
Source DNA available from Paul Jensen (pjensen@ucsd.edu)
Organism available from Paul Jensen (pjensen@ucsd.edu)
Contacts: Paul Jensen (pjensen@ucsd.edu)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::Micromonospora sp. CNB394
collection_date::Missing
lat_lon::Missing
depth::Missing
alt_elev::Missing
country::Missing
num_replicons::Missing
ref_biomaterial::Missing
biotic_relationship::Missing
rel_to_oxygen::Missing
isol_growth_condt::Missing
assembly::Velvet v. 1.1.04; ALLPATHS v. R37654
finishing_strategy::Missing
environment::Missing
trophic_level::Missing
sequencing_meth::WGS
GOLD Stamp ID::Gi18486
Funding Program::DOE-CSP-ICBG 2011
Gram Staining::Gram+
##MIGS-Data-END##

Global statistics

Total sequence length6,344,798
Total ungapped length6,340,679
Gaps between scaffolds0
Number of scaffolds85
Scaffold N50143,942
Scaffold L5012
Number of contigs93
Contig N50143,942
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)93

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,344,798856,340,679143,94280

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Micromonospora sp. CNB394Micromonospora sp. CNB394

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900091565.1Micromonospora marinatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.3189.1793.31

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna