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Bruc_sp_UK38_05_V1

Organism name:
Brucella sp. UK38/05 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: UK38/05
BioSample:
SAMN00811227
BioProject:
PRJNA173611
Submitter:
Broad Institute
Date:
2013/04/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000367125.1 (latest)
RefSeq assembly accession:
GCF_000367125.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AQNR01
Assembly method:
allpaths v. R41689
Genome coverage:
188.0x
Sequencing technology:
Illumina

IDs: 676078 [UID] 591488 [GenBank] 676078 [RefSeq]

See Genome Information for Brucella sp. UK38/05

Pathogen Detection Resources

History (Show revision history)

Comment

Please be aware that the annotation is done automatically with little or no manual curation.

Global statistics

Total sequence length3,314,900
Total ungapped length3,314,900
Number of contigs49
Contig N50130,729
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)49

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,314,900493,314,900130,72900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Brucella sp. UK38/05Brucella sp. UK38/05

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000022745.1Brucella microtisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.7999.1198.45

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna