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ASM44928v1

Organism name:
Clostridioides difficile CD129 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: CD129
BioSample:
SAMN01766583
BioProject:
PRJNA85743
Submitter:
Institute for Genome Sciences
Date:
2013/08/20
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000449285.1 (latest)
RefSeq assembly accession:
GCF_000449285.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AVHP01
Assembly method:
MaSuRCA v. 1.6.1
Genome coverage:
234x
Sequencing technology:
Illumina

IDs: 50291 [UID] 758568 [GenBank] 803428 [RefSeq]

See Genome Information for Clostridioides difficile

Pathogen Detection Resources

There are 19431 assemblies for this organism

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History (Show revision history)

Comment

Bacterial source available from the Biodefense and Emerging Infections Research Resources Repository.

Global statistics

Total sequence length3,980,806
Total ungapped length3,980,806
Number of contigs963
Contig N506,946
Contig L50174
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)963

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,980,8069633,980,8066,94600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridioides difficile CD129Clostridioides difficile

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000376285.1Clostridioides difficile ATCC 9689 = DSM 1296type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000376285.1Clostridioides difficiletype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.8494.4789.37
Best-match type99.8494.4789.37

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna