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ASM31238v1

Organism name:
Tsukamurella sp. 1534 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 1534
BioSample:
SAMEA2272095
BioProject:
PRJEB87
Submitter:
ebi
Date:
2012/10/03
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000312385.1 (latest)
RefSeq assembly accession:
GCF_000312385.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CAJY01

IDs: 641918 [UID] 456798 [GenBank] 641918 [RefSeq]

See Genome Information for Tsukamurella sp. 1534

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length4,503,402
Total ungapped length4,486,005
Gaps between scaffolds0
Number of scaffolds4
Scaffold N502,526,210
Scaffold L501
Number of contigs42
Contig N50164,388
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)42

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced4,503,40244,486,0052,526,210380

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Tsukamurella sp. 1534Tsukamurella sp. 1534

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900637875.1Tsukamurella tyrosinosolvenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.5258.5554.03

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna