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ASM74464v1

  • Anomalous assembly.
Organism name:
Bacillus sp. 72 (firmicutes)
Taxonomy check:
Failed
Infraspecific name:
Strain: 72
BioSample:
SAMN02746017
BioProject:
PRJNA223102
Submitter:
DOE Joint Genome Institute
Date:
2014/08/28
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
GenBank assembly accession:
GCA_000744645.1 (latest)
RefSeq assembly accession:
GCF_000744645.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JQMI01
Assembly method:
Unknown program v. before Fri Aug 15 11:12:54 PDT 2014
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000; PacBio RS

IDs: 205881 [UID] 1192968 [GenBank] 1429018 [RefSeq]

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1009461
Source DNA and Organism available from Ludmila Chistoserdova (milachis@u.washington.edu)
Source DNA available from Ludmila Chistoserdova (milachis@u.washington.edu)
Organism available from Ludmila Chistoserdova (milachis@u.washington.edu)
Contacts: Ludmila Chistoserdova (milachis@u.washington.edu)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::Bacillus sp. 72
sequencing_meth::WGS
finishing_strategy::Level 3: Improved-High-Quality Draft
GOLD Stamp ID::Gi14647
Funding Program::DOE-CSP 2011
Gene Calling Method::Prodigal 2.5
Gram Staining::Gram+
##MIGS-Data-END##

Global statistics

Total sequence length3,908,751
Total ungapped length3,908,751
Number of contigs26
Contig N501,044,352
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)26

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,908,751263,908,7511,044,35200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus sp. 72Bacillus sp. 72

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001643235.1Domibacillus aminovoranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.3680.8184.68

ANI result

Taxonomy check statusBest match statusComment
Failedmismatchna