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TsocrATCC35536v1.0

Organism name:
Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536 (spirochetes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: VPI DR56BR1116 = ATCC 35536
BioSample:
SAMN02344580
BioProject:
PRJNA216958
Submitter:
The J. Craig Venter Institute
Date:
2013/09/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000468115.1 (latest)
RefSeq assembly accession:
GCF_000468115.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AVQI01
Assembly method:
Newbler v. 2.6
Expected final version:
yes
Genome coverage:
85x
Sequencing technology:
Illumina

IDs: 64231 [UID] 782768 [GenBank] 816498 [RefSeq]

See Genome Information for Treponema socranskii

Pathogen Detection Resources

There are 17 assemblies for this organism

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History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.

Global statistics

Total sequence length2,826,695
Total ungapped length2,826,695
Number of contigs84
Contig N5079,527
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)84

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,826,695842,826,69579,52700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536Treponema socranskii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_024181585.1Treponema socranskii subsp. buccaletype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_024181585.1Treponema socranskiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type92.2468.8069.31
Best-match type92.2468.8069.31

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna