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IDs: 502828 [UID] 502508 [GenBank] 502828 [RefSeq]
URL -- http://www.jgi.doe.gov JGI Project ID: 4087633 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the ... distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ more
##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeqAnnotation Date::10/08/2023 12:20:48Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation Method::Best-placed reference protein set; GeneMarkS-2+Annotation Software revision::6.6Features Annotated::Gene; CDS; rRNA; tRNA; ncRNAGenes (total)::4,746CDSs (total)::4,689Genes (coding)::4,514CDSs (with protein)::4,514Genes (RNA)::57rRNAs::2, 2, 2 (5S, 16S, 23S)complete rRNAs::2, 2, 2 (5S, 16S, 23S)tRNAs::47ncRNAs::4Pseudo Genes (total)::175CDSs (without protein)::175Pseudo Genes (ambiguous residues)::0 of 175Pseudo Genes (frameshifted)::78 of 175Pseudo Genes (incomplete)::106 of 175Pseudo Genes (internal stop)::57 of 175Pseudo Genes (multiple problems)::56 of 175##Genome-Annotation-Data-END##
##MIGS-Data-START##investigation_type::bacteria_archaeaproject_name::Leptolyngbya sp. PCC 7376collection_date::1971lat_lon::32.349568 -64.713955depth::Missingalt_elev::Missingcountry::USAenvironment::Missingnum_replicons::1ref_biomaterial::PCC 7376, ATCC 29171biotic_relationship::Free livingtrophic_level::Chemoheterotrophrel_to_oxygen::Aerobeisol_growth_condt::Missingsequencing_meth::WGSassembly::Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPSfinishing_strategy::FinishedGOLD Stamp ID::Gi04448Funding Program::DOE-GEBA 2009Isolation Site::Crystal Cave (limestone), BermudaMotility::NonmotileTemperature Range::MesophileGram Staining::Gram-Diseases::None##MIGS-Data-END##
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