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Source database (GenBank or RefSeq) File type

SpyogGA40056v1.0

Organism name:

Streptococcus pyogenes GA40056 (firmicutes)

Taxonomy check:

Infraspecific name:

Strain: GA40056

BioSample:

SAMN02436403

BioProject:

PRJNA78625

Submitter:

J. Craig Venter Institute

Date:

2013/10/25

Assembly type:

Assembly level:

Contig

Genome representation:

full

Excluded from RefSeq:

annotation fails completeness check
many frameshifted proteins

GenBank assembly accession:

GCA_000483565.1 (latest)

RefSeq assembly accession:

GCF_000483565.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

AWTI01

Assembly method:

Newbler v. 2.6

Expected final version:

yes

Genome coverage:

36x

Sequencing technology:

454

IDs: 71641 [UID] 828278 [GenBank] 830008 [RefSeq]

See Genome Information for Streptococcus pyogenes

Pathogen Detection Resources

There are 23529 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000483565.1	=	GCF_000483565.1	SpyogGA40056v1.0	Contig	Latest GenBank, RefSeq suppressed

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.

Global statistics

Total sequence length	1,822,867
Total ungapped length	1,822,867
Number of contigs	45
Contig N50	79,376
Contig L50	8
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	45

	ANI	Query coverage	Subject coverage
Declared type	98.92	89.48	87.76
Best-match type	98.92	89.48	87.76

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Download Assembly

SpyogGA40056v1.0

See Genome Information for Streptococcus pyogenes

Pathogen Detection Resources

There are 23529 assemblies for this organism

History (Show revision history)

Comment

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result