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ASM38447v1

Organism name:
Methylopila sp. M107 (a-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: M107
BioSample:
SAMN02256399
BioProject:
PRJNA165579
Submitter:
DOE Joint Genome Institute
Date:
2013/04/26
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000384475.1 (latest)
RefSeq assembly accession:
GCF_000384475.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ARWB01
Assembly method:
Velvet v. 1.1.05; ALLPATHS v. r38445; Phrap v. 4.24
Genome coverage:
Unknown
Sequencing technology:
Unknown

IDs: 667598 [UID] 608818 [GenBank] 667598 [RefSeq]

See Genome Information for Methylopila sp. M107

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 404058
Source DNA and Organism available from Ludmila Chistoserdova (milachis@u.washington.edu)
Source DNA available from Ludmila Chistoserdova (milachis@u.washington.edu)
Organism available from Ludmila Chistoserdova (milachis@u.washington.edu)
Contacts: Ludmila Chistoserdova (milachis@u.washington.edu)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::Methylopila sp. M107
collection_date::Missing
lat_lon::Missing
depth::Missing
alt_elev::Missing
country::Missing
num_replicons::Missing
ref_biomaterial::Missing
biotic_relationship::Missing
rel_to_oxygen::Missing
isol_growth_condt::Missing
assembly::Velvet v. 1.1.05; ALLPATHS v. r38445; Phrap v. 4.24
finishing_strategy::Missing
environment::Missing
trophic_level::Missing
sequencing_meth::WGS
GOLD Stamp ID::Gi13965
Current Finishing Status::Level 3: Improved-High-Quality Draft
Funding Program::DOE-CSP 2011
Gram Staining::Gram-
##MIGS-Data-END##

Global statistics

Total sequence length4,453,493
Total ungapped length4,453,493
Number of contigs1
Contig N504,453,493
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,453,49314,453,4934,453,49300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Methylopila sp. M107Methylopila sp. M107

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019797865.1Chenggangzhangella methanolivoranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.5735.9028.84

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna