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ASM25973v1

Organism name:
Burkholderia pseudomallei 1026a (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 1026a
BioSample:
SAMN02471975
BioProject:
PRJNA73057
Submitter:
University of Washington
Date:
2012/04/27
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000259735.1 (latest)
RefSeq assembly accession:
GCF_000259735.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AHJA01
Assembly method:
Velvet v. 1.1.02
Genome coverage:
71x
Sequencing technology:
Illumina GA IIx paired end

IDs: 474708 [UID] 373598 [GenBank] 474708 [RefSeq]

See Genome Information for Burkholderia pseudomallei

Pathogen Detection Resources

There are 3253 assemblies for this organism

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History (Show revision history)

Comment

Source DNA information is available from John M. Kemner, University of Washington, Box 357710, Seattle, WA 98195

Reference-guided assembly based on Burkholderia pseudomallei 1026b deposited in INSD Accession Numbers CP002833 and CP002834.

Global statistics

Total sequence length7,156,856
Total ungapped length7,156,856
Number of contigs291
Contig N5097,038
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)291

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced7,156,8562917,156,85697,03800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia pseudomallei 1026aBurkholderia pseudomallei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_030297255.1Burkholderia pseudomalleitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_030297255.1Burkholderia pseudomalleitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.4195.2496.26
Best-match type99.4195.2496.26

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna