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ASM47413v1

Organism name:
Streptococcus constellatus subsp. pharyngis SK1060 = CCUG 46377 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: CCUG 46377
BioSample:
SAMD00036762
BioProject:
PRJDB79
Submitter:
Pediatric Dentistry, Tokyo Dental College
Date:
2013/09/09
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000474135.1 (latest)
RefSeq assembly accession:
GCF_000474135.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BASX01
Assembly method:
Newbler v. 2.6.0
Genome coverage:
35x
Sequencing technology:
Roche 454

IDs: 67251 [UID] 793218 [GenBank] 1059398 [RefSeq]

See Genome Information for Streptococcus constellatus

Pathogen Detection Resources

There are 36 assemblies for this organism

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History (Show revision history)

Comment

Author's Lab web site
URL:http://www.tmd.ac.jp/grad/bac/database.html

Global statistics

Total sequence length1,950,566
Total ungapped length1,950,566
Number of contigs66
Contig N50143,311
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)66

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced1,950,566661,950,566143,31100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus constellatus subsp. pharyngis SK1060 = CCUG 46377Streptococcus constellatus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_008633005.1Streptococcus constellatus subsp. constellatustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_008633005.1Streptococcus constellatustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.4979.5983.14
Best-match type96.4979.5983.14

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna