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Source database (GenBank or RefSeq) File type

ASM27022v1

Organism name:: Porphyromonas gingivalis TDC60 (CFB group bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: TDC60
BioSample:: SAMD00060990
BioProject:: PRJDA66755
Submitter:: Tokyo Medical and Dental University
Date:: 2011/05/23
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_000270225.1 (latest)
RefSeq assembly accession:: GCF_000270225.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Newbler v. 2.5.1; Phrap v. 1.090518; Consed v. 19.0
Genome coverage:: 17X
Sequencing technology:: Sanger; Roche 454

IDs: 392258 [UID] 389198 [GenBank] 392258 [RefSeq]

See Genome Information for Porphyromonas gingivalis

Pathogen Detection Resources

There are 112 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000270225.1	=	GCF_000270225.1	ASM27022v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::10/20/2023 01:01:49
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,033
CDSs (total)::1,966
Genes (coding)::1,916
CDSs (with protein)::1,916
Genes (RNA)::67
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::53
ncRNAs::2
Pseudo Genes (total)::50
CDSs (without protein)::50
Pseudo Genes (ambiguous residues)::0 of 50
Pseudo Genes (frameshifted)::21 of 50
Pseudo Genes (incomplete)::36 of 50
Pseudo Genes (internal stop)::6 of 50
Pseudo Genes (multiple problems)::13 of 50
CRISPR Arrays::5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,339,898
Total ungapped length	2,339,898
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	98.39	90.18	89.61
Best-match type	98.39	90.18	89.61

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ASM27022v1

See Genome Information for Porphyromonas gingivalis

Pathogen Detection Resources

There are 112 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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