U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



v1.0

Organism name:
Trichoplax adhaerens (placozoans)
Infraspecific name:
Strain: Grell-BS-1999
BioSample:
SAMN02953699
BioProject:
PRJNA12874
Submitter:
US DOE Joint Genome Institute (JGI-PGF)
Date:
2008/06/17
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000150275.1 (latest)
RefSeq assembly accession:
GCF_000150275.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ABGP01

IDs: 173428 [UID] 173408 [GenBank] 173428 [RefSeq]

See Genome Information for Trichoplax adhaerens

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov/Trichoplax
JGI Project ID: 4000159
Source DNA available from Stephen Dellaporta (dellaporta@yale.edu)
Contact: Daniel Rokhsar (DSRokhsar@lbl.gov)
The sole representative species of the phylum Placozoa, Trichoplax adhaerens represents the simplest known animal, with the smallest known animal genome.
The JGI and collaborators endorse ... the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
This version of the assembly, v1.0, represents approximately 8.06X coverage of the genome.
Annotated scaffolds were released in June 2008.  more

Global statistics

Total sequence length105,631,681
Total ungapped length94,749,416
Gaps between scaffolds0
Number of scaffolds1,414
Scaffold N505,978,658
Scaffold L506
Number of contigs3,217
Contig N50204,191
Contig L50132
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)3,217

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced105,631,6811,41494,749,4165,978,6581,8030