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ASM40275v1

Organism name:
Marinimicrobia bacterium SCGC AAA160-B08 (bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: SCGC AAA160-B08
BioSample:
SAMN02441750
BioProject:
PRJNA192377
Submitter:
DOE Joint Genome Institute
Date:
2013/05/29
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from single cell
  • genus undefined
GenBank assembly accession:
GCA_000402755.1 (latest)
RefSeq assembly accession:
GCF_000402755.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AQSD01
Assembly method:
Velvet v. 1.1.04; ALLPATHS v. 41043; Newbler v. 2.4
Single-cell amplification:
MDA
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 712268 [UID] 694208 [GenBank] 712268 [RefSeq]

See Genome Information for Marinimicrobia bacterium SCGC AAA160-B08

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 404439
Source DNA and Organism available from Ramunas Stepanauskas (rstepanauskas@bigelow.org)
Source DNA available from Ramunas Stepanauskas (rstepanauskas@bigelow.org)
Organism available from Ramunas Stepanauskas (rstepanauskas@bigelow.org)
Contacts: Ramunas Stepanauskas (rstepanauskas@bigelow.org)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::SAR406 cluster bacterium SCGC AAA160-B08
collection_date::9/16/2009 12:00:00 AM
lat_lon::43.84 -69.64
depth::Missing
alt_elev::Missing
country::Atlantic Ocean
num_replicons::Missing
ref_biomaterial::Missing
biotic_relationship::Missing
rel_to_oxygen::Missing
isol_growth_condt::Missing
assembly::Velvet v. 1.1.04; ALLPATHS v. 41043; Newbler v. 2.4
finishing_strategy::Level 1: Standard Draft
environment::Marine
trophic_level::Missing
sequencing_meth::WGS
Funding Program::DOE-CSP 2011
Isolation Site::Gulf of Maine
##MIGS-Data-END##

Global statistics

Total sequence length922,550
Total ungapped length922,550
Number of contigs26
Contig N5071,066
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)26

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced922,55026922,55071,06600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Marinimicrobia bacterium SCGC AAA160-B08Marinimicrobia bacterium SCGC AAA160-B08

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000327395.2Mycoplasma feriruminatoristype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.180.110.09

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena