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ASM20967v1

Organism name:
Gallibacterium anatis UMN179 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: UMN179
BioSample:
SAMN02604222
BioProject:
PRJNA65483
Submitter:
University of Minnesota
Date:
2011/04/26
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000209675.1 (latest)
RefSeq assembly accession:
GCF_000209675.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 280428 [UID] 272128 [GenBank] 280428 [RefSeq]

See Genome Information for Gallibacterium anatis

There are 99 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source bacteria is available from Timothy Johnson, joh04207@umn.edu.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/07/2024 00:56:43
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,576
CDSs (total)::2,496
Genes (coding)::2,435
CDSs (with protein)::2,435
Genes (RNA)::80
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6, 6 (5S, 16S, 23S)
tRNAs::57
ncRNAs::4
Pseudo Genes (total)::61
CDSs (without protein)::61
Pseudo Genes (ambiguous residues)::0 of 61
Pseudo Genes (frameshifted)::22 of 61
Pseudo Genes (incomplete)::43 of 61
Pseudo Genes (internal stop)::6 of 61
Pseudo Genes (multiple problems)::10 of 61
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,694,139
Total ungapped length2,694,139
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000209685.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP002667.1=NC_015460.1
Plasmid pUMN179CP002668.1=NC_015461.1

Assembly statistics

MoleculeTotal
Length
All2,694,139
Chromosome 2,687,335
Plasmid pUMN1796,804

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Gallibacterium anatis UMN179Gallibacterium anatis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900450735.1Gallibacterium anatistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900450735.1Gallibacterium anatistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.0279.0381.73
Best-match type97.0279.0381.73

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna