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ASM19508v1

Organism name:
Candidatus Pelagibacter sp. IMCC9063 (a-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: IMCC9063
BioSample:
SAMN02603337
BioProject:
PRJNA62303
Submitter:
Inha University
Date:
2011/04/05
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000195085.1 (latest)
RefSeq assembly accession:
GCF_000195085.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 273958 [UID] 255208 [GenBank] 273958 [RefSeq]

See Genome Information for Candidatus Pelagibacter sp. IMCC9063

History (Show revision history)

Comment

Source DNA is available upon request; Please contact Professor Jang-Cheon Cho (chojc@inha.ac.kr) at Department of Biological Sciences of Inha University, Incheon, Korea.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found ... here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000195085.1-RS_2024_03_31
Annotation Date::03/31/2024 08:10:59
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,434
CDSs (total)::1,396
Genes (coding)::1,385
CDSs (with protein)::1,385
Genes (RNA)::38
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::32
ncRNAs::3
Pseudo Genes (total)::11
CDSs (without protein)::11
Pseudo Genes (ambiguous residues)::0 of 11
Pseudo Genes (frameshifted)::5 of 11
Pseudo Genes (incomplete)::6 of 11
Pseudo Genes (internal stop)::0 of 11
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,284,727
Total ungapped length1,284,727
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000195095.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP002511.1=NC_015380.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,284,727

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Pelagibacter sp. IMCC9063Candidatus Pelagibacter sp. IMCC9063

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000012345.1Candidatus Pelagibacter ubiquesuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.991.091.07

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena