AFVS00000000.1 Escherichia coli O104:H4 str. TY-2482

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# of Contigs: 2,641 # of Proteins: 0 Total length: 5,426,565 bp BioProject: PRJNA67657 BioSample: SAMN02471597 Keywords: WGS Organism: Escherichia coli O104:H4 str. TY-2482 – show lineagehide lineage Bacteria, Proteobacteria, Gammaproteobacteria, Enterobacterales, Enterobacteriaceae, Escherichia, Escherichia coli Biosource: /collection_date = May-2011 /country = Germany /host = Homo sapiens /isolation_source = stool sample from patient with hemolytic uremic syndrome (HUS) /mol_type = genomic /serovar = 0104:H4 /strain = TY-2482 WGS: AFVS01000001:AFVS01002641 Reference: Open-Source Genomic Analysis of Shiga-Toxin-Producing E. coli O104:H4 : N. Engl. J. Med. 365 (8), 718-724 (2011) – show 36 authorshide authors Rohde,H., Qin,J., Cui,Y., Li,D., Loman,N.J., Hentschke,M., Chen,W., Pu,F., Peng,Y., Li,J., Xi,F., Li,S., Li,Y., Zhang,Z., Yang,X., Zhao,M., Wang,P., Guan,Y., Cen,Z., Zhao,X., Christner,M., Kobbe,R., Loos,S., Oh,J., Yang,L., Danchin,A., Gao,G.F., Song,Y., Li,Y., Yang,H., Wang,J., Xu,J., Pallen,M.J., Wang,J., Aepfelbacher,M., Yang,R. Submission: Submitted (22-JUL-2011) Centre for Systems Biology, University of Birmingham, Edgbaston, Birmingham, West Midlands B17 9AN, UK – show 36 authorshide authors Rohde,H., Qin,J., Cui,Y., Li,D., Loman,N.J., Hentschke,M., Chen,W., Pu,F., Peng,Y., Li,J., Xi,F., Li,S., Li,Y., Zhang,Z., Yang,X., Zhao,M., Wang,P., Guan,Y., Cen,Z., Zhao,X., Christner,M., Kobbe,R., Loos,S., Oh,J., Yang,L., Danchin,A., Gao,G.F., Song,Y., Li,Y., Yang,H., Wang,J., Xu,J., Pallen,M.J., Wang,J., Aepfelbacher,M., Yang,R.

The Escherichia coli O104:H4 str. TY-2482 whole genome shotgun (WGS) project has the project accession AFVS00000000. This version of the project (01) has the accession number AFVS01000000, and consists of sequences AFVS01000001-AFVS01002641. Bacteria available from M. Aepfelbacher, University Medical Centre Hamburg-Eppendorf, Hamburg, Germany. Ion Torrent de novo assembly of 5 chips of 314 data. ##Genome-Assembly-Data-START## Assembly Method : MIRA v. 3.2.1.17_dev Assembly Name : E.coli_0104:H4_IonTorrent_1.0 Genome Coverage : 10x Sequencing Technology : Ion Torrent ##Genome-Assembly-Data-END##

Contigs

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GenBank:AFVS01.1.gbff.gz 2.4 Mb

FASTA:AFVS01.1.fsa_nt.gz 1.6 Mb

ASN.1:AFVS01.1.bbs.gz 5.3 Mb

History

Minor Version	Create Date
1	07/27/2011
5	11/11/2017