AFVR00000000.1 Escherichia coli O104:H4 str. TY-2482

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# of Contigs: 242 # of Proteins: 0 # of Scaffolds/Chrs: 99 Total length: 5,345,887 bp BioProject: PRJNA67657 BioSample: SAMN02471605 Keywords: WGS Organism: Escherichia coli O104:H4 str. TY-2482 – show lineagehide lineage Bacteria, Proteobacteria, Gammaproteobacteria, Enterobacterales, Enterobacteriaceae, Escherichia, Escherichia coli Biosource: /collection_date = May-2011 /country = Germany /host = Homo sapiens /isolation_source = stool sample from patient with hemolytic uremic syndrome (HUS) /mol_type = genomic /serovar = O104:H4 /strain = TY-2482 WGS: AFVR01000001:AFVR01000242 Scaffolds: GL989507:GL989605 99 scaffolds, total length is 5,440,378 bases Reference: Open-Source Genomic Analysis of Shiga-Toxin-Producing E. coli O104:H4 : N. Engl. J. Med. 365 (8), 718-724 (2011) – show 36 authorshide authors Rohde,H., Qin,J., Cui,Y., Li,D., Loman,N.J., Hentschke,M., Chen,W., Pu,F., Peng,Y., Li,J., Xi,F., Li,S., Li,Y., Zhang,Z., Yang,X., Zhao,M., Wang,P., Guan,Y., Cen,Z., Zhao,X., Christner,M., Kobbe,R., Loos,S., Oh,J., Yang,L., Danchin,A., Gao,G.F., Song,Y., Li,Y., Yang,H., Wang,J., Xu,J., Pallen,M.J., Wang,J., Aepfelbacher,M., Yang,R. Submission: Submitted (22-JUL-2011) Centre for Systems Biology, University of Birmingham, Edgbaston, Birmingham, West Midlands B17 9AN, UK – show 36 authorshide authors Rohde,H., Qin,J., Cui,Y., Li,D., Loman,N.J., Hentschke,M., Chen,W., Pu,F., Peng,Y., Li,J., Xi,F., Li,S., Li,Y., Zhang,Z., Yang,X., Zhao,M., Wang,P., Guan,Y., Cen,Z., Zhao,X., Christner,M., Kobbe,R., Loos,S., Oh,J., Yang,L., Danchin,A., Gao,G.F., Song,Y., Li,Y., Yang,H., Wang,J., Xu,J., Pallen,M.J., Wang,J., Aepfelbacher,M., Yang,R.

The Escherichia coli O104:H4 str. TY-2482 whole genome shotgun (WGS) project has the project accession AFVR00000000. This version of the project (01) has the accession number AFVR01000000, and consists of sequences AFVR01000001-AFVR01000242. Bacteria available from M. Aepfelbacher, University Medical Centre Hamburg-Eppendorf, Hamburg, Germany. Illumina HiSeq 2000 de novo assembly using 470bp paired-end library (90bp reads), 2kb mate-paired library and 6kb mate-paired library (50bp reads). Assembly contigs greater than 200bp in size and/or belonging to a scaffold are included. ##Genome-Assembly-Data-START## Assembly Method : SOAPdenovo v. 1.05; Gapcloser Assembly Name : E.coli_0104:H4_Illumina_1.0 Genome Coverage : 300x Sequencing Technology : Illumina HiSeq ##Genome-Assembly-Data-END##

Contigs

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GenBank:AFVR01.1.gbff.gz 2.3 Mb

FASTA:AFVR01.1.fsa_nt.gz 1.6 Mb

ASN.1:AFVR01.1.bbs.gz 1.3 Mb

History

Minor Version	Create Date
1	07/27/2011
5	11/11/2017